The following does not answer the question! It only gives some ideas of where I personnaly found some work involving network analysis in biology.
Most of the networks I've heard about in biology concern
- network of species interactions
- network of individual interactions within a population
- network of subpopulation interactions within a metapopulation
- neuronal network
- anatomy network (blood vessels, skelleton, etc..)
- network of metabolic pathways.
I give you below a bunch of article title that discuss networks in biology. I'll probably add the links later $ \ddot\smile$ but if you just copy-paste these titles on scholar.google or on WebOfKnowledge you will easily find the articles.
- Evolution of a vertebrate social decision-making network
- climate change, human impacts coral reefs
- architecture of mutualistic increase biodiviversity
- variation in migration propensity among individuals maintained by landscape structure
- skeleton and fractal scaling in complex networks
The only evolving network I have heard about concern species interactions. Unfortunately, I can't find most of the articles that came to my mind. But here is one:
- Habitat modification alters the structure of tropical host-parasitoid food webs
ItThis last article concerns the impact of environmental change invarious environment on the network of trophic interactions between host and parasites. Fairly interesting for a biologist.
I thinkwould expect that most evolving networks in biology concerns the impact of environmental changes on the network of species, subpopulations and species interactions. You may have expected some stuff that are more related to evolutionary biology. I think most of this work concers evolutionary ecology and evolutionary processes in metapopulations. Here is a very interesting and very theoretical article (by stuart kauffmann) on evolutionary biology though that has nothing to do with ecology.
- antichaos and adaptation
Hope that helps