Timeline for Applying Constraint Programming to sequence alignment/analysis
Current License: CC BY-SA 3.0
7 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| Sep 3, 2014 at 18:48 | comment | added | Anas Elghafari | Thanks, maybe. One will have to look at the systems/tools mentioned in the article to see if there are any that are constraints-based (rather than statistics based) or at least incorporate constraints in some way.If so then that would be a good candidate for constraints programming project. | |
| Sep 2, 2014 at 12:53 | history | edited | ggggg | CC BY-SA 3.0 |
deleted 133 characters in body
|
| Sep 2, 2014 at 12:51 | comment | added | ggggg | Try reading this article: plosone.org/article/… Any help? | |
| Sep 2, 2014 at 12:45 | comment | added | Anas Elghafari | The closest thing I've seen that may be suitable for constraints approach is the use to transformational grammar for long-distance dependencies. But even there I am not very sure it can be framed as CSP. | |
| Sep 2, 2014 at 12:42 | comment | added | Anas Elghafari | Well, I am in the middle of project on using HMMs for alignment, and have read the basics. But the problems I have read about (aligning two sequences for functional analysis and allowing for nucleotide insertion/deletion) does not seem to be suitable for modelling with constraints. So I am asking to see if there are other problems that might be better suitable for that. | |
| Sep 2, 2014 at 11:25 | review | First posts | |||
| Sep 2, 2014 at 11:36 | |||||
| Sep 2, 2014 at 11:23 | history | answered | ggggg | CC BY-SA 3.0 |