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Nov 17, 2015 at 9:34 comment added bli There are regulatory motif databases, and prediction algorithms for functions in a sequence, but all this is not fully known. Indeed, things are rarely fully regular in biology, so every bioinformatics predictions ideally should be completed with experimental confirmation. Also, the same sequence can sometimes be parsed in various way: a single DNA sequence may encode several proteins, depending on which portions are actually translated into amino-acids. Some keywords you may be interested in: start codon, stop codon, open reading frame, 3'UTR, 5'UTR, binding box.
Nov 16, 2015 at 16:42 vote accept kate
Nov 16, 2015 at 16:42 comment added kate Yes, this is what I mean. Thank you very much for your answer! Do all these - e.g. where is the part in a DNA sequence that involve in function x - already known?
Nov 16, 2015 at 14:42 history answered bli CC BY-SA 3.0