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A computational technique to compare two nucleotide or protein sequences. There are two basic types of sequence alignment i.e. local alignment (local comparison of subsequences) or global alignment (end to end comparison of the entire sequences).
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What is the meaning of dots and dashes in clustalw?
I am converting outputs in stockholm format to clustalw using
Bio::AlignIO->new(-file => "$ARGV[0]", -format => "stockholm"); and
Bio::AlignIO ->new (-format =>'clustalw');
I am also using
my $ …