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Results tagged with sequence-analysis
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user 8060
Analysis of DNA, RNA or protein (amino acid) sequences. Here sequences are compared so analyze similarities and conserved regions. Sequence analysis is usually done by specialized software.
5
votes
1
answer
914
views
Blosum matrix with probabilities instead of the positive and negative scores
I am trying to find a version of the BLOSUM matrix that has the frequencies instead of the scaled log-odds. i.e. instead of the common version that tells us that the score LEU/ASP is -4, I would like …
- 277
1
vote
1
answer
208
views
Datasets of aligned nucleotide sequences [closed]
Where can I find some datasets of aligned nucleotide sequences? And what should I assume about the accuracy of the alignments there?
(I would like to use such datasets for training the alignment mode …
- 277
1
vote
1
answer
108
views
Applying Constraint Programming to sequence alignment/analysis
My Masters program is focused on formal methods such as SAT solving and constraint programming. I am interested in applying such techniques to problems in sequence alignment and sequence analysis, are …
- 277