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What Why is there a carbon atom does C' denote inwithout a greek letter in protein residueresidues?

In particular, I've readFor protein residues I know that dihedral angles are calculated between two planes defined by$C\alpha$ denotes the Nfirst carbon atom attached to a functional group. Each subsequent carbon is given a corresponding greek letter ($\beta, \gamma, \delta$) except for one. For example, C-alpha and C' of each residue. I'm pretty certain in a PDB file has a list of atoms that it's either the next carbon atom after Clooks something like this:

  • ATOM 32 N AARG
  • ATOM 33 CA AARG
  • ATOM 34 C AARG
  • ATOM 35 O AARG
  • ATOM 36 CB AARG
  • ATOM 37 CG AARG
  • ATOM 38 CD AARG

(A,B,G,D are stand-alpha or the last carbon atom inins for the residuegreek letters). Why is there just a plain C in this list? What is significant about that carbon?

What carbon atom does C' denote in a protein residue?

In particular, I've read that dihedral angles are calculated between two planes defined by the N, C-alpha and C' of each residue. I'm pretty certain that it's either the next carbon atom after C-alpha or the last carbon atom in the residue.

Why is there a carbon atom without a greek letter in protein residues?

For protein residues I know that $C\alpha$ denotes the first carbon atom attached to a functional group. Each subsequent carbon is given a corresponding greek letter ($\beta, \gamma, \delta$) except for one. For example, each residue in a PDB file has a list of atoms that looks something like this:

  • ATOM 32 N AARG
  • ATOM 33 CA AARG
  • ATOM 34 C AARG
  • ATOM 35 O AARG
  • ATOM 36 CB AARG
  • ATOM 37 CG AARG
  • ATOM 38 CD AARG

(A,B,G,D are stand-ins for the greek letters). Why is there just a plain C in this list? What is significant about that carbon?

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What carbon atom does C' denote in a protein residue?

In particular, I've read that dihedral angles are calculated between two planes defined by the N, C-alpha and C' of each residue. I'm pretty certain that it's either the next carbon atom after C-alpha or the last carbon atom in the residue.