In particular, I've readFor protein residues I know that dihedral angles are calculated between two planes defined by$C\alpha$ denotes the Nfirst carbon atom attached to a functional group. Each subsequent carbon is given a corresponding greek letter ($\beta, \gamma, \delta$) except for one. For example, C-alpha and C' of each residue. I'm pretty certain in a PDB file has a list of atoms that it's either the next carbon atom after Clooks something like this:
- ATOM 32 N AARG
- ATOM 33 CA AARG
- ATOM 34 C AARG
- ATOM 35 O AARG
- ATOM 36 CB AARG
- ATOM 37 CG AARG
- ATOM 38 CD AARG
(A,B,G,D are stand-alpha or the last carbon atom inins for the residuegreek letters). Why is there just a plain C in this list? What is significant about that carbon?