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Protein Data Bank, a publically available database of molecular structures of proteins

2 votes
1 answer
94 views

How do I identify the carbonyl atoms in a PDB file

Can I infer it from the atom name alone? Or do I need to look at the structure of the residue it is in?
Ivan Spirandelli's user avatar
0 votes
1 answer
93 views

How is the "global pLDDT" score in the Protein Data Bank calculated?

It is my understanding that pLDDT is usually calculated per residue for a given prediction of a protein structure by comparing it to some 'true protein structure' (taken from PDB for example?). … Other entries in the PDB? …
Ivan Spirandelli's user avatar