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David
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How doesdid the genetic code evolve?

After looking at this question, some other questions poped in my mind.

The DNAgenetic code is redundant, there are 20 amino acids for 64 possible nucleotide combinations (triplet codons). Therefore some amino acid are coded by several different nucleotide combinationscodons. While Leucineleucine is coded by 6 codons, Tryptophantryptophan is coded only by 1one codon. It is worth saying

[I am aware that the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acidbase that does not modifyaffect the coded amino-acid (third-position wobble)that is encoded.]

Therefore, I would expecttherefore do not think that the genetic code cannot notcan be entirely be explained by "it“it happened to occur thisthat way the first timetime” (at the origin of life or in the last universal common ancestor [LUCA]) and“and it never changed"changed”.

So, my questions are:

  • Why are some amino acids are coded by a big set ofseveral codons while others are coded only by one codonor two?

  • And more specificallySpecifically, why methionine is methionine coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon — which has also to serve as a start signal?

  • Or more broadly: WhyIn general, how (by whichwhat mechanisms, which selective pressure if any, ...pressures) has the genetic code evolved theto give this pattern of redundancies?

How does the genetic code evolve?

After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in the last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

How did the genetic code evolve?

The genetic code is redundant, there are 20 amino acids for 64 possible nucleotide combinations (triplet codons). Therefore some amino acid are coded by several different codons. While leucine is coded by 6 codons, tryptophan is coded only by one codon.

[I am aware that the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last base that does not affect the amino-acid that is encoded.]

I therefore do not think that the genetic code can be entirely be explained by “it happened to occur that way the first time” (at the origin of life or in the last universal common ancestor) “and it never changed”.

So, my questions are:

  • Why are some amino acids coded by a several codons while others are coded only by one or two?

  • Specifically, why is methionine coded by only one codon AUG — which has also to serve as a start signal?

  • In general, how (by what mechanisms, selective pressures) has the genetic code evolved to give this pattern of redundancies?

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After looking at this questionthis question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in the last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in the last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in the last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

LUCA -> last universal common ancestor
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kmm
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After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in LUCAthe last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in LUCA) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

After looking at this question, some other questions poped in my mind.

The DNA code is redundant, there are 20 amino acids for 64 possible nucleotide combinations. Therefore some amino acid are coded by several different nucleotide combinations. While Leucine is coded by 6 codons, Tryptophan is coded only by 1 codon. It is worth saying the set of codons that code for one given amino acid tend to look alike each other more than random. Usually it is only the last nucleic acid that does not modify the coded amino-acid (third-position wobble).

Therefore, I would expect that the genetic code cannot not entirely be explained by "it happened to occur this way the first time (at the origin of life or in the last universal common ancestor [LUCA]) and it never changed".

So, my questions are:

  • Why some amino acids are coded by a big set of codons while others are coded only by one codon?

  • And more specifically, why methionine is coded by only one codon (start codon = AUG) where all other amino-acids (except Tryptophan, Selenocysteine and Pyrrolysine) are coded for by more than one codon?

  • Or more broadly: Why (by which mechanisms, which selective pressure if any, ...) has the genetic code evolved the redundancies?

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