I have a list of proteins formatted like this:
Protein Name Gene Name 4E-BPI EIF4EBP1 4E-BPI_pS65 EIF4EBP1 4E-BPI_PT37_T46 EIF4EBP1 53BP1 TP53BP1
Its my job to pull the following from Uniprot:
- Subcellular Location information (this is easy)
- Information about phosphorylated forms
The first thing I did was compile a list of Uniprot IDs for each gene's human form that I could plug into the Upload List function.
Next, I used Uniprot's "Customize Results Table" page, to add the "Subcellular Location" column to the output. Do you know columns will provide information about the phosphorylated forms of these proteins? I added columns PTM > PhosSite and PTM > PhosphoSite but they return the Uniprot ID or nothing at all.
Is there somewhere else in Uniprot that I can look for information about phosphorylated forms of proteins?