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James
James
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How to batch convert gene numbersnames to protein IDs in Uniprot?

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James
James
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How to batch convert gene numbers to protein IDs in Uniprot?

No need for the other tags, this is entirely bioinformatics
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James
James
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Batch How to batch convert gene numbers ("ordered locus names") to protein IDs?

I have a list of >1000 "ordered locus names" from the STRING database (also called gene numbers, ORF numbers, or CDS numbers by uniprot). They're in the form of 'b0014', 'b0015', etc. I'd like to convert them all to Uniprot protein IDs.

I know how to do it in a non-batch way, since searching Uniprot for 'b0014' returns what (I think) is a protein ID. However I'd like a batch solution since there are so many IDs that need converting.

Batch convert gene numbers ("ordered locus names") to protein IDs

I have a list of >1000 "ordered locus names" from the STRING database (also called gene numbers, ORF numbers, or CDS numbers by uniprot). They're in the form of 'b0014', 'b0015', etc. I'd like to convert them all to protein IDs.

I know how to do it in a non-batch way, since searching Uniprot for 'b0014' returns what (I think) is a protein ID. However I'd like a batch solution since there are so many.

How to batch convert gene numbers to protein IDs?

I have a list of >1000 "ordered locus names" from the STRING database (also called gene numbers, ORF numbers, or CDS numbers by uniprot). They're in the form of 'b0014', 'b0015', etc. I'd like to convert them all to Uniprot protein IDs.

I know how to do it in a non-batch way, since searching Uniprot for 'b0014' returns what (I think) is a protein ID. However I'd like a batch solution since there are so many IDs that need converting.

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R Greg Stacey
R Greg Stacey
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