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I want to simulate interaction between the bHLH-LZ domain of c-Myc encoded protein and a test ligand. Since the domain is intrinsically disordered, I want to generate all possible conformations of the IDP to run several iterations of simulation, each time with a different conformation. How can I do so? I would really appreciate if you could explain me what is the basis of these conformations and explain the concept?
Thank you!

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