Skip to main content
deleted 524 characters in body; edited title
Source Link

Is every possible gRNA available for a CRIPSR experiment How many cuts are done during CRISPR-Cas9 in one cell?

I might have misunderstood the wayIn a CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance withcuts the purposesite matching the cRNA part of the experimentgRNA.

Now what I don't really understand My question is where does: How many cuts are possible if multiples sites matching the gRNA comes from, and whatcRNA are found in the possible composition of gRNAscell?

For an experimentEspecially, it is apparently bought to some companies. According to this article:

sgRNA can be synthetically generated or made in vitro or in vivo from a DNA template.

Soconsidering DNA is made of multiple chromosomes, if more than one chromosome have a site matching the cRNA, will they all be cut? Does it possible to synthetize any gRNAdepend of the quantity of Cas9 protein brought in during the experiment (any chain of ATCG basismeaning is some Cas9 protein "consumpted" at each cut)? This sounds somewhat "magic". Wikipedia article mentions mitochondries, are they te "pool" where to get gRNAs?

Is every possible gRNA available for a CRIPSR experiment?

I might have misunderstood the way CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance with the purpose of the experiment.

Now what I don't really understand is where does the gRNA comes from, and what are the possible composition of gRNAs?

For an experiment, it is apparently bought to some companies. According to this article:

sgRNA can be synthetically generated or made in vitro or in vivo from a DNA template.

So is it possible to synthetize any gRNA (any chain of ATCG basis)? This sounds somewhat "magic". Wikipedia article mentions mitochondries, are they te "pool" where to get gRNAs?

How many cuts are done during CRISPR-Cas9 in one cell?

In a CRISPR-Cas9 experiment, the protein cuts the site matching the cRNA part of the gRNA. My question is: How many cuts are possible if multiples sites matching the cRNA are found in the cell?

Especially, considering DNA is made of multiple chromosomes, if more than one chromosome have a site matching the cRNA, will they all be cut? Does it depend of the quantity of Cas9 protein brought in during the experiment (meaning is some Cas9 protein "consumpted" at each cut)?

added 247 characters in body; edited title
Source Link

How is Is every possible gRNA producedavailable for a CRIPSR experiment?

I might have misunderstood the way CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance with the purpose of the experiment.

Now what I don't really understand is where does the gRNA comes from, and what are the possible composition of gRNAs?

For an experiment, it is apparently bought to some companies. But how doesAccording to this article:

sgRNA can be synthetically generated or made in vitro or in vivo from a DNA template.

So is it possible to synthetize any gRNA (any chain of ATCG basis)? This sounds somewhat "magic". Wikipedia article mentions mitochondries, are they te "pool" where to get itgRNAs? My hypothesis:

  • Is it synthetized ? If yes, how?
  • Is it "taken" from organisms (wikipedia about gRNA mentions mitochondries), and if yes how?

How is gRNA produced for a CRIPSR experiment?

I might have misunderstood the way CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance with the purpose of the experiment.

Now what I don't really understand is where does the gRNA comes from?

For an experiment, it is apparently bought to some companies. But how does they get it? My hypothesis:

  • Is it synthetized ? If yes, how?
  • Is it "taken" from organisms (wikipedia about gRNA mentions mitochondries), and if yes how?

Is every possible gRNA available for a CRIPSR experiment?

I might have misunderstood the way CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance with the purpose of the experiment.

Now what I don't really understand is where does the gRNA comes from, and what are the possible composition of gRNAs?

For an experiment, it is apparently bought to some companies. According to this article:

sgRNA can be synthetically generated or made in vitro or in vivo from a DNA template.

So is it possible to synthetize any gRNA (any chain of ATCG basis)? This sounds somewhat "magic". Wikipedia article mentions mitochondries, are they te "pool" where to get gRNAs?

Source Link

How is gRNA produced for a CRIPSR experiment?

I might have misunderstood the way CRISPR-Cas9 experiment works, but what I understood is that, alongside other things, a gRNA is used to "guide" the Cas9-protein into:

  • Cut at the right position
  • Make the cell build a new DNA sequence at the position

I found a lot of examples of tools, such as CRISPRSeek, that are used to select gRNAs that will correctly guide the Cas-9 protein in accordance with the purpose of the experiment.

Now what I don't really understand is where does the gRNA comes from?

For an experiment, it is apparently bought to some companies. But how does they get it? My hypothesis:

  • Is it synthetized ? If yes, how?
  • Is it "taken" from organisms (wikipedia about gRNA mentions mitochondries), and if yes how?