I'm trying to design a primer for Gibson assembly. My gene of interest is on a plasmid, and I want to copy that gene, and put it into a different plasmid.
I am unsure how to design my primers for PCR.
I know that i need 2 sets of primers (4 total).
- Backward and forward primer to copy my gene out of the plasmid that holds it.
- Backward and forward primer to copy the plasmid.
I also know that I need to complementary regions of overlap between my gene and the plasmid i want to put it in. How do I do this?
Here is the Plasmid and the gene. I want to place the gene in between the biobrick prefix and suffix.
Here is what primers I think I need:
For the plasmid I want to put the gene in, my primers should be
Forward: ATTCGCGGCCGCTTCTAGAG
Reverse: CTGACGCGGCCGCTACTAGTA
Primers to copy gene and add overlap
Reverse:ATCATTTCAAATTCGTCCATCTCTAGAAGCGGCCGCGAAT
Forward: AATTAGAAAGAGATTATAATACTAGTAGCGGCCGCTGCA
Here is the gene
IodoY TyrRs https://docs.google.com/file/d/0B5gGZ4-SD7-ZalhLdG5PR3VvUVk/edit?usp=sharing
Here is the plasmid I want to put it in
https://docs.google.com/file/d/0B5gGZ4-SD7-ZbUNld2FWel9SQTA/edit?usp=sharing
I am using geneious but I i think for this purpose, word works just fine.