After mRNA is released from the nucleus, the next process is its translation by ribosomes. By what physical, chemical or biochemical process does the mRNA reach the ribosome in the cytoplasm?
$\begingroup$ I didn't understand your thought experiment involving a table... Did you mean 'test tube' or 'dish' rather than 'table'? $\endgroup$– AdhishOct 24, 2020 at 9:01
$\begingroup$ Yes, just an assumption. It could be anything a table, a testtube or a dish. Im just trying to understand how the mRNA moves towards ribosome, how it finds the ribosome location?!? $\endgroup$– Raghav venkatOct 24, 2020 at 9:04
1$\begingroup$ I'm sorry, but I think the edited question is still bad. Your second paragraph is unnecessary and misleading as what you are interested in is what happens in the cell, not reconstituting the situation. Also, mRNA is a molecule — it doesn't know anything — so in science I consider it bad practice to write in a way that suggests otherwise. Finally the cell has a nucleus and a cytoplasm. The term cytosol describes an experimentally prepared cytoplasm from which organelles have been removed. I have edited your question, but the answer is basic — random collision — so I am voting to close. $\endgroup$– DavidOct 26, 2020 at 10:10
$\begingroup$ Thank you @david $\endgroup$– Raghav venkatOct 26, 2020 at 10:31
$\begingroup$ Consider also that (i) the nucleus has two membranes, an inner and outer one, and (ii) that the endoplasmic reticulum (ER) is continuous with the outer nucleus membrane. mRNA 'typically' leaves diffuses through pores in the outer nucleus membrane directly into the cytoplasm where free ribosomes are found, but some of it may also get into the ER. where you may also find ribosomes ('rough ER'). $\endgroup$– S PrOct 26, 2020 at 11:49
The answer to the first part of your question is: diffusion. After transcription and some processing, the eukaryotic mRNA is exported to the cytoplasm. Here it floats around until it meets a ribosome. Binding of ribosome to mRNA is facilitated by proteins called initiation factors (IFs) and the 5' cap of mRNA$^1$.
The second part of your question basically asks about cell-free protein synthesis using an RNA template. This has already been shown to work: one is reminded of the famous Nirenberg–Matthaei experiment$^2$, which ultimately led to the cracking of the genetic code. Nirenberg and Matthaei worked with bacterial cell extracts, but systems based on eukaryotic cell extracts have also been developed$^3$.
References and further reading:
- Nelson DL, Cox MM. Lehninger principles of biochemistry. 7th ed (international edition). Basingstoke, England: Macmillan Higher Education; c2017. Chapter 27, Protein metabolism; p. 1077–1126.
- Nirenberg MW, Matthaei JH. The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides. PNAS. 1961 Oct 1;47(10):1588–1602. https://doi.org/10.1073/pnas.47.10.1588
- Chong S. Overview of cell‐free protein synthesis: historic landmarks, commercial systems, and expanding applications. Curr Protoc Mol Bio. 2014 Oct 1;108(1):16.30.1–11. https://doi.org/10.1002/0471142727.mb1630s108
$\begingroup$ Okay, now it makes sense! Thanks! $\endgroup$ Oct 25, 2020 at 22:24
$\begingroup$ Ribosomes are floating around in the cytosol dissociated into subunits, they assemble around the initiation factors bound to the mRNA (and scanning for AUG), depending on the signal peptide and so on during translation they might bind to the ER membrane, after the translation they dissociate and float around again. $\endgroup$– reunsOct 28, 2020 at 13:43
please have a look at this article and its images.
R. J. Jackson et al., 2010, Nature Rev. Mol. Cell Biol. 11:113.
In a nutshell, recognition of mRNA by ribosome occurs in multiple steps.Interaction of mRNA with (eukaryotic) initiation factors(eIF) leads to this. eIF4 complex interacts with mRNA and then an intermediate circular mRNA is formed with the aid of ATP hydrolysis.This circular mRNA attaches to the small subunit of ribosome.(the small subunit has a dozen of helper proteins attached to itself.) After the attachment of circular mRNA to the small subunit , you can say that mRNA has "found" the ribosome as the small subunit would then form a complex with the large subunit and begin the Elongation step of Translation.